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The instructions on this page assume that you already have a local computing account; if not, see [[Accounts and Registration|'''First Steps for New Users''']].
== How to get started with MiniCLEAN ==
Papers and other Documents to get started with MiniCLEAN
* A very nice summary of the status of the detector and upcoming commissioning at SNOLAB in Sudbury, Canada:
https://absuploads.aps.org/presentation.cfm?pid=12471
* The rat-pac tutorial (this is the SNO+ version). Take a look at the available RAT version on github and more info
** https://github.com/rat-pac/rat-pac/blob/master/doc/Tutorial001.pdf
==== Some detailed links ====
* a nice article on recently developed analysis techniques
Update on the MiniCLEAN Dark Matter Experiment.
MINICLEAN Collaboration (K. Rielage (Los Alamos) et al.). Mar 19, 2014. 9 pp.
Published in Phys.Procedia 61 (2015) 144-152.
e-Print: arXiv:1403.4842 [physics.ins-det] https://arxiv.org/pdf/1403.4842.pdf
* a Bayesian technique applied to the general problem of particle identification in single-phase liquid argon dark matter detectors here is a very nice article
Improving Photoelectron Counting and Particle Identification in Scintillation Detectors with Bayesian Techniques.
M. Akashi-Ronquest (Los Alamos) et al.. Aug 8, 2014. 15 pp.
Published in Astropart.Phys. 65 (2015) 40-54.
e-Print: arXiv:1408.1914 [physics.ins-det] https://arxiv.org/pdf/1408.1914.pdf
== Getting a Vault Account ==
You must get a miniclean vault account, this can be obtained by emailing [mailto:kpalladino@wisc.edu Kim Palladino]. She will create the account and then send, to your email, the login information.
You can check and must manage your account via https://deapclean.org/vault/profile/.
When you update it, another account is created for you to access the RAT svn and documentation.
The vault is the MiniCLEAN document/online database source. It is located [https://deapclean.org/vault/ here].
== Set up RAT account ==
You will need a RAT account, this can only be obtained once you have a miniclean vault account.
The RAT User Guide is [https://deapclean.org/rat/trac/wiki/UserGuide here].
== How to run MiniCLEAN RAT jobs with HTCondor ==
==== In order to use the computing resources at Wisconsin, one can submit HTCondor jobs to run simulation ====
ssh <username>@login02.hep.wisc.edu
# Make a valid voms-proxy<br>voms-proxy-init -valid 142:00
# Run runWiscJobs script to submit jobs
# To get help about options
# python /cvmfs/lz.opensciencegrid.org/sw/bin/runWiscJobs.py -h
python /cvmfs/lz.opensciencegrid.org/sw/bin/runWiscJobs.py \
--WorkFlow="ar39.mac_test1" \
--Executable="farmoutRAT.sh" \
--Experiment=miniclean \
--nJobs=1 \
--TransferInputFile="ar39.mac" \
--HDFSProdDir=outputfile \
--UserEnv="UserName=`whoami` " \
--OutputDir="ar39.mac" \
--Arguments="ar39.mac"
# If you want your output copied to HDFS, have your executable copy the output
# files to the directory you specify with --HDFSProdDir.
====Executable example: FarmountRAT.sh====
#!/bin/bash
wdir=$(pwd)
# Source the environment needed to run RAT
source /afs/hep.wisc.edu/ddm/ratcage/local/bin/geant4.sh
source /afs/hep.wisc.edu/ddm/ratcage/root-5.34.12/bin/thisroot.sh
source /afs/hep.wisc.edu/ddm/ratcage/env.sh
# Temporary directory that gets created on the execute node<br>tmpDir=$(mktemp -d --tmpdir="./")
cd $tmpDir
cp ../*.mac .
pwd
# Run the RAT
rat -o ar39_test1.root ar39.mac
mkdir -p ../outputfile
cd ../outputfile<br>ln -s ../$tmpDir/*.root .
==== Example ar39.mac ====
/glg4debug/glg4param omit_muon_processes 1.0<br>/glg4debug/glg4param omit_hadronic_processes 1.0
/rat/db/set DETECTOR experiment "MiniCLEAN"<br>/rat/db/set DETECTOR geo_file "MiniCLEAN/MiniCLEAN.geo"
/rat/db/set SHELLFIT position_only 1<br>/rat/db/set SHELLFIT single_pe 1
/rat/db/set DAQ st_prune 0
/run/initialize
/rat/proc daq<br>/rat/proc calibrate<br>/rat/proc pulseIntWindow<br>/rat/proc singlepe
/rat/proc mcfprompt
/rat/proc fprompt
/rat/proc shellfit
/rat/proc fitcentroid
/rat/proc lrecoil
/tracking/setMaxGlobalTime 1.e9
/rat/proc count<br>/rat/procset update 10
# Use IO.default_output_filename<br>/rat/proclast outroot
# Uses a beta decay spectrum which includes corrections from nuclear physics.
/generator/add combo spectrum:fillshell
/generator/vtx/set e- Ar39_beta
# Uses beta decay generator, but does not include corrections.
#/generator/add decaychain 39Ar:fill
# /tracking/storeTrajectory 1
# /tracking/discardParticleTrajectory opticalphoton
# Use fill shell method, /generator/pos/set X Y Z Ri Ro volname
/generator/pos/set 0 0 0 0 1016 cryoliquid
/generator/rate/set 1.0
/run/beamOn 10000
== Example Miniclean analysis code ==
Location of the example annotated analysis script:
/afs/hep.wisc.edu/ddm/MiniCLEAN/annotated_analysis_script.C
This analysis code needs to be compiled before you can run it.
To compile the analysis code, make a copy in the direction that you want to work in, source RAT by running
source /afs/hep.wisc.edu/ddm/ratcage/env.sh
Open ROOT, then run in ROOT
.L annotated_analysis_script.C+
This loads the C script into ROOT and then compiles it, be sure to append the '+' after the C to compile.
To run it, call the function defined in the script. In this case, you should run
makehistogram("PATH_TO_YOUR_ROOT_FILE")
A copy of the analysis code is here [[Miniclean annotated analysis script]]
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